{"id":126,"date":"2012-04-28T01:21:22","date_gmt":"2012-04-27T16:21:22","guid":{"rendered":"http:\/\/codinuum.com\/ja\/?p=126"},"modified":"2012-04-30T23:33:18","modified_gmt":"2012-04-30T14:33:18","slug":"software-phylogenetics-2","status":"publish","type":"post","link":"https:\/\/codinuum.com\/ja\/research\/software-phylogenetics-2.html","title":{"rendered":"\u30bd\u30d5\u30c8\u30a6\u30a7\u30a2\u7cfb\u7d71\u5b66\uff08\uff12\uff09"},"content":{"rendered":"<p>\u305d\u308c\u3067\u306f\u3001\u5b9f\u969b\u306b\u30bd\u30d5\u30c8\u30a6\u30a7\u30a2\u306e\u7cfb\u7d71\u6a39\u3092\u5fa9\u5143\uff08\u63a8\u5b9a\uff09\u3057\u3066\u307f\u307e\u3057\u3087\u3046\u3002<!--more-->\u3053\u3053\u3067\u306f\u3001<a href=\"http:\/\/www.gnu.org\/software\/emacs\/emacs-paper.html\" target=\"_blank\">Emacs<\/a>\u3068\u547c\u3070\u308c\u308b\u30a8\u30c7\u30a3\u30bf\u30fc\u3092\u4f8b\u306b\u3001\u7cfb\u7d71\u6a39\u3092\u5fa9\u5143\u3057\u3066\u307f\u307e\u3059\u3002Emacs\u306f\u30011970\u5e74\u4ee3\u306b\u305d\u306e\u539f\u578b\u304c\u4f5c\u3089\u308c\u3066\u304b\u3089\u5f8c\u3001\u591a\u304f\u306e\u6d3e\u751f\u7a2e\u304c\u751f\u307f\u51fa\u3055\u308c\u307e\u3057\u305f\u30022012\u5e74\u73fe\u5728\u3082\u5e7e\u3064\u304b\u306e\u5b50\u5b6b\u306e\u958b\u767a\u304c\u7d9a\u3051\u3089\u308c\u3066\u3044\u307e\u3059\u3002\u307e\u3055\u306b\u984c\u6750\u3068\u3057\u3066\u6253\u3063\u3066\u4ed8\u3051\u3067\u3059\u3002\u7cfb\u7d71\u6a39\u306e\u5fa9\u5143\u306b\u306f\u3001\u751f\u7269\u7cfb\u7d71\u5b66\uff08\u5206\u5b50\u7cfb\u7d71\u5b66\uff09\u3067\u306f\u304a\u306a\u3058\u307f\u306e\u3001<a href=\"http:\/\/www.appliedbiosystems.jp\/website\/jp\/biobeat\/contents.jsp?TYPE=C&amp;BIOCATEGORYCD=6&amp;COLUMNCD=3308\" target=\"_blank\">\u8ddd\u96e2\u884c\u5217\u6cd5<\/a>\u3092\u7528\u3044\u307e\u3059\u3002\u3053\u3053\u3067\u8a00\u3046\u8ddd\u96e2\uff08\u9032\u5316\u8ddd\u96e2\u3068\u547c\u3070\u308c\u308b\uff09\u3068\u306f\u3001\u751f\u7269\u306e\u5834\u5408\u306fDNA\u306e\u5869\u57fa\u914d\u5217\u306e\u9055\u3044\u3092\u8868\u3059\u6570\u5024\u3067\u3059\u3002\u30bd\u30d5\u30c8\u30a6\u30a7\u30a2\u306e\u5834\u5408\u306f\u3001\u3053\u3053\u3067\u306f\u30bd\u30fc\u30b9\u30b3\u30fc\u30c9\u306e\u9055\u3044\u3092\u8868\u3059\u6570\u5024\u3068\u8003\u3048\u307e\u3059\u3002\u8ddd\u96e2\u884c\u5217\u3068\u306f\u3001\u7cfb\u7d71\u6a39\u306e\u8981\u7d20\u3068\u306a\u308b\u300c\u7a2e\u300d\u306e\u9593\u306e\u8ddd\u96e2\u3092\u7db2\u7f85\u7684\u306b\u8a18\u3057\u305f\u884c\u5217\u3067\u3059\u3002\u5206\u5b50\u7cfb\u7d71\u5b66\u3067\u306f\u3001\u8ddd\u96e2\u884c\u5217\u304b\u3089\u7cfb\u7d71\u6a39\u3092\u751f\u6210\u3059\u308b\u30bd\u30d5\u30c8\u30a6\u30a7\u30a2\u304c\u7528\u3044\u3089\u308c\u307e\u3059\u304c\u3001\u3053\u3053\u3067\u306f\u305d\u306e\u4e00\u3064\u3067\u3042\u308b<a href=\"http:\/\/evolution.genetics.washington.edu\/phylip.html\" target=\"_blank\">PHYLIP<\/a>\u3068\u547c\u3070\u308c\u308b\u30bd\u30d5\u30c8\u30a6\u30a7\u30a2\u3092\u6d41\u7528\u3057\u307e\u3059\u3002\u4eca\u56de\u306e\u7cfb\u7d71\u6a39\u5fa9\u5143\u306e\u624b\u9806\u3092\u307e\u3068\u3081\u308b\u3068\u6b21\u306e\u3088\u3046\u306b\u306a\u308a\u307e\u3059\u3002<\/p>\n<h2>\u30b5\u30f3\u30d7\u30eb\u306e\u53ce\u96c6<\/h2>\n<p>\u30b5\u30f3\u30d7\u30eb\uff08\u6d3e\u751f\u7a2e\u3082\u542b\u3080\uff09\u306e\u30bd\u30fc\u30b9\u30b3\u30fc\u30c9\u3092\u53ce\u96c6\u3057\u307e\u3059\u3002\u65b0\u3057\u3044\u30b5\u30f3\u30d7\u30eb\u306f\u53ce\u96c6\u304c\u5bb9\u6613\u3067\u3059\u304c\u3001\u53e4\u3044\u30b5\u30f3\u30d7\u30eb\u306e\u53ce\u96c6\u306f\u9aa8\u304c\u6298\u308c\u307e\u3059\u3002\u305d\u308c\u3067\u3082\u306a\u3093\u3068\u304b\u30011985\u5e74\u306b\u30ea\u30ea\u30fc\u30b9\u3055\u308c\u305fGNU Emacs\u306e13.8.15\u3092\u7b46\u982d\u306b\u300126\u306e\u521d\u671fEmacs\u306e\u30b5\u30f3\u30d7\u30eb\u3092\u96c6\u3081\u308b\u4e8b\u304c\u3067\u304d\u307e\u3057\u305f\u3002\u53ce\u96c6\u3057\u305f\u30b5\u30f3\u30d7\u30eb\u306f\u3001<\/p>\n<ul>\n<li>GNU Emacs: 13.8.15, 16.56, 18.41, 18.51, 18.55, 18.57, 18.58, 18.59, 19.7, 19.8, 19.18, 19.23, 19.28, 19.34<\/li>\n<li>Lucid Emacs: 19.0.23, 19.6, 19.8, 19.10<\/li>\n<li>XEmacs: 19.11<\/li>\n<li>Epoch: 3.2, 4.0p2, 4.1, 4.2<\/li>\n<li>NEmacs: 3.3.2<\/li>\n<li>Mule: 1.1, 2.3<\/li>\n<\/ul>\n<p>\u3067\u3059\u3002<\/p>\n<h2>\u8ddd\u96e2\u884c\u5217\u306e\u8a08\u7b97<\/h2>\n<p>\u30b5\u30f3\u30d7\u30eb\u9593\u306e\u9032\u5316\u8ddd\u96e2\u3092\u7db2\u7f85\u7684\u306b\u8a08\u7b97\u3057\u3001\u8ddd\u96e2\u884c\u5217\u3092\u4f5c\u308a\u307e\u3059\u3002\u30bd\u30d5\u30c8\u30a6\u30a7\u30a2\u306e\u9032\u5316\u8ddd\u96e2\u306e\u6e2c\u308a\u65b9\u306f\u69d8\u3005\u3067\u3059\u304c\u3001\u3053\u3053\u3067\u306f\u3001\u30bd\u30fc\u30b9\u30b3\u30fc\u30c9\u306eAST\uff08Abstract Syntax Tree\u3001\u62bd\u8c61\u69cb\u6587\u6728\uff09\u306e\u7de8\u96c6\u8ddd\u96e2\uff08edit distance\uff09\u3092\u8003\u3048\u307e\u3059\u3002AST\u9593\u306e\u7de8\u96c6\u8ddd\u96e2\u306e\u8a08\u7b97\u306b\u306f\u3001<a title=\"Diff\/TS: A Tool for Fine-Grained Structural Change Analysis (WCRE2008)\" href=\"https:\/\/codinuum.com\/ja\/publications\/wcre2008.html\" target=\"_blank\">Diff\/TS<\/a>\u3068\u547c\u3070\u308c\u308b\u6728\u69cb\u9020\u9593\u5dee\u5206\u8a08\u7b97\u30b7\u30b9\u30c6\u30e0\u3092\u5229\u7528\u3057\u307e\u3059\u3002<\/p>\n<h2>\u7cfb\u7d71\u6a39\u306e\u63a8\u5b9a<\/h2>\n<p>PHYLIP\u306b\u306f\u5206\u5b50\u7cfb\u7d71\u5b66\u306b\u7e8f\u308f\u308b\u591a\u304f\u306e\u30a2\u30eb\u30b4\u30ea\u30ba\u30e0\u304c\u5b9f\u88c5\u3055\u308c\u3066\u3044\u307e\u3059\u3002\u8ddd\u96e2\u884c\u5217\u6cd5\u306e\u30a2\u30eb\u30b4\u30ea\u30ba\u30e0\u3082\u5e7e\u3064\u304b\u5b9f\u88c5\u3055\u308c\u3066\u3044\u307e\u3059\u304c\u3001\u3053\u3053\u3067\u306fFITCH\u3068\u547c\u3070\u308c\u308bFitch-Margoliash\u6cd5\u306e\u5b9f\u88c5\u3092\u5229\u7528\u3057\u307e\u3059\u3002FITCH\u306b\u4e0a\u8ff0\u306e\u8ddd\u96e2\u884c\u5217\u3092\u4e0e\u3048\u308b\u3060\u3051\u3067\u3001\u7cfb\u7d71\u6a39\u304c\u51fa\u529b\u3055\u308c\u307e\u3059\u3002<\/p>\n<p>\u3055\u3066\u3001\u6b21\u56de\u306f\u3044\u3088\u3044\u3088\u5fa9\u5143\u3055\u308c\u305fEmacs\u306e\u7cfb\u7d71\u6a39\u3092\u3054\u7d39\u4ecb\u3057\u307e\u3059\u3002<\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u305d\u308c\u3067\u306f\u3001\u5b9f\u969b\u306b\u30bd\u30d5\u30c8\u30a6\u30a7\u30a2\u306e\u7cfb\u7d71\u6a39\u3092\u5fa9\u5143\uff08\u63a8\u5b9a\uff09\u3057\u3066\u307f\u307e\u3057\u3087\u3046\u3002<\/p>\n","protected":false},"author":2,"featured_media":0,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[6],"tags":[],"class_list":["post-126","post","type-post","status-publish","format-standard","hentry","category-research"],"_links":{"self":[{"href":"https:\/\/codinuum.com\/ja\/wp-json\/wp\/v2\/posts\/126","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/codinuum.com\/ja\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/codinuum.com\/ja\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/codinuum.com\/ja\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/codinuum.com\/ja\/wp-json\/wp\/v2\/comments?post=126"}],"version-history":[{"count":18,"href":"https:\/\/codinuum.com\/ja\/wp-json\/wp\/v2\/posts\/126\/revisions"}],"predecessor-version":[{"id":144,"href":"https:\/\/codinuum.com\/ja\/wp-json\/wp\/v2\/posts\/126\/revisions\/144"}],"wp:attachment":[{"href":"https:\/\/codinuum.com\/ja\/wp-json\/wp\/v2\/media?parent=126"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/codinuum.com\/ja\/wp-json\/wp\/v2\/categories?post=126"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/codinuum.com\/ja\/wp-json\/wp\/v2\/tags?post=126"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}